PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024222.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 245aa    MW: 27283.3 Da    PI: 7.4449
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024222.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.1e-32151207158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k  +ksrkpylheSRh+hAlrR+Rg+gGrF
  CCG024222.1 151 EEPVFVNAKQYHGILRRRQSRAKAESESKA-IKSRKPYLHESRHQHALRRARGCGGRF 207
                  69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.3E-36149210IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.232150210IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-27152207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-23153175IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860155175IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-23184207IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLQFHLDLFL FGVNRASRFE FRDSVCITAM TSSLHDLSAG CPDNSEADEQ QNESEPQIQS  60
SSPAMAQAHP HPHPHPGFST PNVQYATPQL GAGHAMAPAT YPYPDPYYRS IFAPYDPQPY  120
PPQPYGAQPM VHLQLMGIQQ AGVPLPSDAV EEPVFVNAKQ YHGILRRRQS RAKAESESKA  180
IKSRKPYLHE SRHQHALRRA RGCGGRFLNS KKKENQEHNE VASGDKSQSN INLNSDKNDI  240
VSSND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21150215166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826931e-72AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence.
GenBankAC1878641e-72AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038881.11e-153PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_011038882.11e-153PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ84JP18e-67NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLU5GW441e-146U5GW44_POPTR; Uncharacterized protein
STRINGPOPTR_0001s38100.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-52nuclear factor Y, subunit A7